Satpathy, Ansuman T: search on Z-Library

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1

Coupled Single-Cell CRISPR Screening and Epigenomic Profiling Reveals Causal Gene Regulatory Networks

Rubin, Adam J., Parker, Kevin R., Satpathy, Ansuman T., Qi, Yanyan, Wu, Beijing, Ong, Alvin J., Mumbach, Maxwell R., Ji, Andrew L., Kim, Daniel S., Cho, Seung Woo, Zarnegar, Brian J., Greenleaf, Willi

Journal:

Year:

2018

Language:

english

File:

PDF, 13.43 MB

english, 2018

2

Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion

Satpathy, Ansuman T., Granja, Jeffrey M., Yost, Kathryn E., Qi, Yanyan, Meschi, Francesca, McDermott, Geoffrey P., Olsen, Brett N., Mumbach, Maxwell R., Pierce, Sarah E., Corces, M. Ryan, Shah, Preyas

Journal:

Nature Biotechnology

Year:

2019

Language:

english

File:

PDF, 27.51 MB

english, 2019

3

Integrative analysis of single-cell genomics data by coupled nonnegative matrix factorizations

Duren, Zhana, Chen, Xi, Zamanighomi, Mahdi, Zeng, Wanwen, Satpathy, Ansuman T., Chang, Howard Y., Wang, Yong, Wong, Wing Hung

Journal:

Proceedings of the National Academy of Sciences

Year:

2018

Language:

english

File:

PDF, 1.43 MB

english, 2018

4

Gene regulation in the immune system by long noncoding RNAs

Chen, Y Grace, Satpathy, Ansuman T, Chang, Howard Y

Journal:

Nature Immunology

Year:

2017

Language:

english

File:

PDF, 1.50 MB

english, 2017

5

A Long Noncoding RNA lincRNA-EPS Acts as a Transcriptional Brake to Restrain Inflammation

Atianand, Maninjay K., Hu, Wenqian, Satpathy, Ansuman T., Shen, Ying, Ricci, Emiliano P., Alvarez-Dominguez, Juan R., Bhatta, Ankit, Schattgen, Stefan A., McGowan, Jason D., Blin, Juliana, Braun, Joer

Journal:

Year:

2016

Language:

english

File:

PDF, 2.50 MB

english, 2016

6

An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues

Corces, M Ryan, Trevino, Alexandro E, Hamilton, Emily G, Greenside, Peyton G, Sinnott-Armstrong, Nicholas A, Vesuna, Sam, Satpathy, Ansuman T, Rubin, Adam J, Montine, Kathleen S, Wu, Beijing, Kathiria

Journal:

Year:

2017

Language:

english

File:

PDF, 865 KB

english, 2017

7

Author Correction: Discovery of stimulation-responsive immune enhancers with CRISPR activation

Simeonov, Dimitre R., Gowen, Benjamin G., Boontanrart, Mandy, Roth, Theodore L., Gagnon, John D., Mumbach, Maxwell R., Satpathy, Ansuman T., Lee, Youjin, Bray, Nicolas L., Chan, Alice Y., Lituiev, Dmy

Journal:

Year:

2018

Language:

english

File:

PDF, 527 KB

english, 2018

8

Cryptic activation of an Irf8 enhancer governs cDC1 fate specification

Durai, Vivek, Bagadia, Prachi, Granja, Jeffrey M., Satpathy, Ansuman T., Kulkarni, Devesha H., Davidson, Jesse T., Wu, Renee, Patel, Swapneel J., Iwata, Arifumi, Liu, Tian-Tian, Huang, Xiao, Briseño,

Journal:

Nature Immunology

Year:

2019

File:

PDF, 8.70 MB

2019

9

Bcl11a Controls Flt3 Expression in Early Hematopoietic Progenitors and Is Required for pDC Development In Vivo

Wu, Xiaodi, Satpathy, Ansuman T., KC, Wumesh, Liu, Pentao, Murphy, Theresa L., Murphy, Kenneth M., Kovats, Susan

Journal:

Year:

2013

Language:

english

File:

PDF, 4.47 MB

english, 2013

10

An old BATFâs new T-ricks

Lareau, Caleb A., Satpathy, Ansuman T.

Journal:

Nature Immunology

Year:

2020

File:

PDF, 925 KB

2020

11

Expression of the transcription factor ZBTB46 distinguishes human histiocytic disorders of classical dendritic cell origin

Satpathy, Ansuman T., Brown, Ryanne A., Gomulia, Ellen, Briseño, Carlos G., Mumbach, Maxwell R., Pan, Zenggang, Murphy, Kenneth M., Natkunam, Yasodha, Chang, Howard Y., Kim, Jinah

Journal:

Modern Pathology

Year:

2018

Language:

english

File:

PDF, 3.31 MB

english, 2018

12

Compensatory dendritic cell development mediated by BATF–IRF interactions

Tussiwand, Roxane, Lee, Wan-Ling, Murphy, Theresa L., Mashayekhi, Mona, KC, Wumesh, Albring, Jörn C., Satpathy, Ansuman T., Rotondo, Jeffrey A., Edelson, Brian T., Kretzer, Nicole M., Wu, Xiaodi, Weis

Journal:

Year:

2012

Language:

english

File:

PDF, 1008 KB

english, 2012

13

Ly6Chi Monocytes in the Inflamed Colon Give Rise to Proinflammatory Effector Cells and Migratory Antigen-Presenting Cells

Zigmond, Ehud, Varol, Chen, Farache, Julia, Elmaliah, Elinor, Satpathy, Ansuman T., Friedlander, Gilgi, Mack, Matthias, Shpigel, Nahum, Boneca, Ivo G., Murphy, Kenneth M., Shakhar, Guy, Halpern, Zamir

Journal:

Year:

2012

Language:

english

File:

PDF, 2.47 MB

english, 2012

14

Tracking the immune response with single-cell genomics

Yost, Kathryn E., Chang, Howard Y., Satpathy, Ansuman T.

Journal:

Year:

2019

File:

PDF, 323 KB

2019

15

Revisiting the specificity of the MHC class II transactivator CIITA in classical murine dendritic cells in vivo

Anderson, David A., Grajales-Reyes, Gary E., Satpathy, Ansuman T., Hueichucura, Carlos E. Vasquez, Murphy, Theresa L., Murphy, Kenneth M.

Journal:

European Journal of Immunology

Year:

2017

Language:

english

File:

PDF, 1.12 MB

english, 2017

16

Long Noncoding RNA in Hematopoiesis and Immunity

Satpathy, Ansuman T., Chang, Howard Y.

Journal:

Year:

2015

Language:

english

File:

PDF, 1.48 MB

english, 2015

17

Cutting Edge: Origins, Recruitment, and Regulation of CD11c + Cells in Inflamed Islets of Autoimmune Diabetes Mice

Klementowicz, Joanna E., Mahne, Ashley E., Spence, Allyson, Nguyen, Vinh, Satpathy, Ansuman T., Murphy, Kenneth M., Tang, Qizhi

Journal:

The Journal of Immunology

Year:

2017

Language:

english

File:

PDF, 1.37 MB

english, 2017

18

Chromatin Landscape Underpinning Human Dendritic Cell Heterogeneity

Leylek, Rebecca, AlcÃ¡ntara-HernÃ¡ndez, Marcela, Granja, Jeffrey M., Chavez, Michael, Perez, Kimberly, Diaz, Oscar R., Li, Rui, Satpathy, Ansuman T., Chang, Howard Y., Idoyaga, Juliana

Journal:

Year:

2020

File:

PDF, 47 KB

2020

19

Chromatin Accessibility Landscape of Cutaneous T Cell Lymphoma and Dynamic Response to HDAC Inhibitors

Qu, Kun, Zaba, Lisa C., Satpathy, Ansuman T., Giresi, Paul G., Li, Rui, Jin, Yonghao, Armstrong, Randall, Jin, Chen, Schmitt, Nathalie, Rahbar, Ziba, Ueno, Hideki, Greenleaf, William J., Kim, Youn H.,

Journal:

Year:

2017

Language:

english

File:

PDF, 4.95 MB

english, 2017

20

Impaired mitochondrial oxidative phosphorylation limits the self-renewal of T cells exposed to persistent antigen

Vardhana, Santosha A., Hwee, Madeline A., Berisa, Mirela, Wells, Daniel K., Yost, Kathryn E., King, Bryan, Smith, Melody, Herrera, Pamela S., Chang, Howard Y., Satpathy, Ansuman T., van den Brink, Mar

Journal:

Nature Immunology

Year:

2020

File:

PDF, 13.98 MB

2020

21

Discovery of stimulation-responsive immune enhancers with CRISPR activation

Simeonov, Dimitre R., Gowen, Benjamin G., Boontanrart, Mandy, Roth, Theodore L., Gagnon, John D., Mumbach, Maxwell R., Satpathy, Ansuman T., Lee, Youjin, Bray, Nicolas L., Chan, Alice Y., Lituiev, Dmy

Journal:

Year:

2017

Language:

english

File:

PDF, 4.95 MB

english, 2017

22

Notch2-dependent DC2s mediate splenic germinal center responses

Briseño, Carlos G., Satpathy, Ansuman T., Davidson, Jesse T., Ferris, Stephen T., Durai, Vivek, Bagadia, Prachi, O’Connor, Kevin W., Theisen, Derek J., Murphy, Theresa L., Murphy, Kenneth M.

Journal:

Proceedings of the National Academy of Sciences

Year:

2018

Language:

english

File:

PDF, 1.58 MB

english, 2018

23

GWAS for systemic sclerosis identifies multiple risk loci and highlights fibrotic and vasculopathy pathways

López-Isac, Elena, Acosta-Herrera, Marialbert, Kerick, Martin, Assassi, Shervin, Satpathy, Ansuman T., Granja, Jeffrey, Mumbach, Maxwell R., Beretta, Lorenzo, Simeón, Carmen P., Carreira, Patricia, Or

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 1.21 MB

english, 2019

24

ATAC-see reveals the accessible genome by transposase-mediated imaging and sequencing

Chen, Xingqi, Shen, Ying, Draper, Will, Buenrostro, Jason D, Litzenburger, Ulrike, Cho, Seung Woo, Satpathy, Ansuman T, Carter, Ava C, Ghosh, Rajarshi P, East-Seletsky, Alexandra, Doudna, Jennifer A,

Journal:

Year:

2016

Language:

english

File:

PDF, 5.91 MB

english, 2016

25

Transcription factor networks in dendritic cell development

Ansuman T. Satpathy, Kenneth M. Murphy, Wumesh KC

Journal:

Seminars in Immunology

Year:

2011

Language:

english

File:

PDF, 1.07 MB

english, 2011

26

Transcript-indexed ATAC-seq for precision immune profiling

Satpathy, Ansuman T., Saligrama, Naresha, Buenrostro, Jason D., Wei, Yuning, Wu, Beijing, Rubin, Adam J., Granja, Jeffrey M., Lareau, Caleb A., Li, Rui, Qi, Yanyan, Parker, Kevin R., Mumbach, Maxwell

Journal:

Nature Medicine

Year:

2018

Language:

english

File:

PDF, 8.46 MB

english, 2018

27

Pembrolizumab for advanced basal cell carcinoma: An investigator-initiated, proof-of-concept study

Chang, Anne Lynn S., Tran, Duy C., Cannon, John G.D., Li, Shufeng, Jeng, Mark, Patel, Roma, Van der Bokke, Lindsay, Pague, Alana, Brotherton, Richard, Rieger, Kerri E., Satpathy, Ansuman T., Yost, Kat

Journal:

Journal of the American Academy of Dermatology

Year:

2019

Language:

english

File:

PDF, 341 KB

english, 2019

28

Embryonic and Adult-Derived Resident Cardiac Macrophages Are Maintained through Distinct Mechanisms at Steady State and during Inflammation

Epelman, Slava, Lavine, Kory J., Beaudin, Anna E., Sojka, Dorothy K., Carrero, Javier A., Calderon, Boris, Brija, Thaddeus, Gautier, Emmanuel L., Ivanov, Stoyan, Satpathy, Ansuman T., Schilling, Joel

Journal:

Year:

2014

Language:

english

File:

PDF, 3.43 MB

english, 2014

29

Clonal replacement of tumor-specific T cells following PD-1 blockade

Yost, Kathryn E., Satpathy, Ansuman T., Wells, Daniel K., Qi, Yanyan, Wang, Chunlin, Kageyama, Robin, McNamara, Katherine L., Granja, Jeffrey M., Sarin, Kavita Y., Brown, Ryanne A., Gupta, Rohit K., C

Journal:

Nature Medicine

Year:

2019

Language:

english

File:

PDF, 37.52 MB

english, 2019

30

Chromatin accessibility landscapes of skin cells in systemic sclerosis nominate dendritic cells in disease pathogenesis

Liu, Qian, Zaba, Lisa, Satpathy, Ansuman T., Longmire, Michelle, Zhang, Wen, Li, Kun, Granja, Jeffrey, Guo, Chuang, Lin, Jun, Li, Rui, Tolentino, Karen, Kania, Gabriela, Distler, Oliver, Fiorentino, D

Journal:

Nature Communications

Year:

2020

File:

PDF, 3.22 MB

2020

31

HiChIRP reveals RNA-associated chromosome conformation

Mumbach, Maxwell R., Granja, Jeffrey M., Flynn, Ryan A., Roake, Caitlin M., Satpathy, Ansuman T., Rubin, Adam J., Qi, Yanyan, Jiang, Zhaozhao, Shams, Shadi, Louie, Bryan H., Guo, Jimmy K., Gennert, Da

Journal:

Year:

2019

Language:

english

File:

PDF, 1.45 MB

english, 2019

32

Interrogation of human hematopoiesis at single-cell and single-variant resolution

Ulirsch, Jacob C., Lareau, Caleb A., Bao, Erik L., Ludwig, Leif S., Guo, Michael H., Benner, Christian, Satpathy, Ansuman T., Kartha, Vinay K., Salem, Rany M., Hirschhorn, Joel N., Finucane, Hilary K.

Journal:

Nature Genetics

Year:

2019

File:

PDF, 5.81 MB

2019

33

Re(de)fining the dendritic cell lineage

Satpathy, Ansuman T, Wu, Xiaodi, Albring, Jörn C, Murphy, Kenneth M

Journal:

Nature Immunology

Year:

2012

Language:

english

File:

PDF, 1013 KB

english, 2012

34

Notch2-dependent classical dendritic cells orchestrate intestinal immunity to attaching-and-effacing bacterial pathogens

Satpathy, Ansuman T, Briseño, Carlos G, Lee, Jacob S, Ng, Dennis, Manieri, Nicholas A, KC, Wumesh, Wu, Xiaodi, Thomas, Stephanie R, Lee, Wan-Ling, Turkoz, Mustafa, McDonald, Keely G, Meredith, Matthew

Journal:

Nature Immunology

Year:

2013

Language:

english

File:

PDF, 3.58 MB

english, 2013

35

HiChIRP reveals RNA-associated chromosome conformation

Mumbach, Maxwell R., Granja, Jeffrey M., Flynn, Ryan A., Roake, Caitlin M., Satpathy, Ansuman T., Rubin, Adam J., Qi, Yanyan, Jiang, Zhaozhao, Shams, Shadi, Louie, Bryan H., Guo, Jimmy K., Gennert, Da

Journal:

Year:

2019

File:

PDF, 1.45 MB

2019

36

Heme-Mediated SPI-C Induction Promotes Monocyte Differentiation into Iron-Recycling Macrophages

Haldar, Malay, Kohyama, Masako, So, Alex Yick-Lun, KC, Wumesh, Wu, Xiaodi, Briseño, Carlos G., Satpathy, Ansuman T., Kretzer, Nicole M., Arase, Hisashi, Rajasekaran, Namakkal S., Wang, Li, Egawa, Take

Journal:

Year:

2014

Language:

english

File:

PDF, 17.70 MB

english, 2014

37

L-Myc expression by dendritic cells is required for optimal T-cell priming

KC, Wumesh, Satpathy, Ansuman T., Rapaport, Aaron S., Briseño, Carlos G., Wu, Xiaodi, Albring, Jörn C., Russler-Germain, Emilie V., Kretzer, Nicole M., Durai, Vivek, Persaud, Stephen P., Edelson, Bria

Journal:

Year:

2014

Language:

english

File:

PDF, 11.50 MB

english, 2014

38

Extrathymic Aire-Expressing Cells Are a Distinct Bone Marrow-Derived Population that Induce Functional Inactivation of CD4+ T Cells

Gardner, James M., Metzger, Todd C., McMahon, Eileen J., Au-Yeung, Byron B., Krawisz, Anna K., Lu, Wen, Price, Jeffrey D., Johannes, Kellsey P., Satpathy, Ansuman T., Murphy, Kenneth M., Tarbell, Kris

Journal:

Year:

2013

Language:

english

File:

PDF, 3.12 MB

english, 2013

39

Re(de)fining the dendritic cell lineage

Satpathy, Ansuman T, Wu, Xiaodi, Albring, Jörn C, Murphy, Kenneth M

Journal:

Nature Immunology

Year:

2013

Language:

english

File:

PDF, 97 KB

english, 2013

40

An Nfil3–Zeb2–Id2 pathway imposes Irf8 enhancer switching during cDC1 development

Bagadia, Prachi, Huang, Xiao, Liu, Tian-Tian, Durai, Vivek, Grajales-Reyes, Gary E., Nitschké, Maximilian, Modrusan, Zora, Granja, Jeffrey M., Satpathy, Ansuman T., Briseño, Carlos G., Gargaro, Marco,

Journal:

Nature Immunology

Year:

2019

File:

PDF, 9.34 MB

2019

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